Laboratory Methods & Such
Media
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nham nham
^a philosophical algae^

Dita B. Vizoso

Email:
dita.vizoso_at_unibas.ch

Address:
Institute of Zoology
Evolutionary Biology
University of Basel
Vesalgassesse 1
4051 Basel
Switzerland

> the schärer group
Media are very important for culturing both the algae and the worm cultures in our lab. Please download and read the general MacLab guidelines thoroughly and make sure that they are followed when attempting to culture Macrostomum and Nitzschia.

Here is a list of the different media we use for maintenance and work with Macrostomum.
When available, we provide the Sigma number between brackets. dH2O = deionized H2O

solution recipe (adjust your quantities) used for
ASW for 1 liter:

32 gr HW Sea Salt
1 L dH2O
Dissolve the sea salt in the distilled water. It helps to shake it vigorously with little distilled water and then add up to the one liter.

Check that the salinity is 32 per mil, and add more salt or water if necessary: the weight of the salt changes after the container has been open because it absorbs humidity from the air. Therefore, keep your salt dry!

Store in air-tight flask, and use within two-three weeks. Discard if there are changes in smell, transparency, or if a precipitate occurs.

NOTE that when working with other Macrostomum species, the salinity may change. Change the amount of salt accordingly (e.g. for a 19 per mil salinity, add 19 gr of salt to 1000 ml of distilled water).
worm washing
iso-female lines
f/2
f/2

pdf
for 2 litres:

2 L ASW
1 mL Stock I
1 mL Stock II
1 mL Stock III
1 mL Stock IV
0.5 mL Vitamins
(aka Guilliard's medium)

Prepare the Artificial Sea Water in an autoclavable bottle. Add the different stock solutions in order, shaking well after each addition. You can also add the Vitamins after autoclaving, by sterile-filtering (Thiamine is heat-unstable, but will denature even at room temperature after a few days). Autoclave for at least 48 minutes at 120 degrees Celsius. Note that a white precipitate occurs during autoclaving.

Check the salinity (it may change during autoclaving) and correct if necessary.

Before use, filter to a clean flask. Keep well covered (use an air-tight flask or cover with parafilm). Use within three weeks after filtering, and discard if there are changes in smell, transparency, or if a new precipitate occurs.
algae culturing
Stock I NaNO3
150 g/L

for 100 mL:

15 g NaNO3(S5506)
100 ml dH2O
Using an autoclavable bottle, dissolve the salt in the distilled water. Autoclave for at least 20 minutes at 120°C (248°F). Store cool and dark, and use within six months. Discard if there are changes in transparency, colour, or if a precipitate occurs.

ATTENTION: TOXIC.
f2
Stock II NaH2PO4*H2O
10 g/L

for 100 mL:

1 g NaH2PO4*H2O
(S9638)
100 ml dH2O
Using an autoclavable bottle, dissolve the salt in the distilled water. Autoclave for at least 20 minutes at 120°C (248°F). Store cool and dark, and use within six months. Discard if there are changes in transparency, colour, or if a precipitate occurs.

ATTENTION: TOXIC.
f2
Stock III Na2SiO3*9H2O
30 g/L

for 100 mL:

3 g Na2SiO3*9H2O
(S4392)

100 mL dH2O

Note that this is half the concentration than in Andersen & al. Double if original recipe wanted.
Using an autoclavable bottle, dissolve the salt in the distilled water. Autoclave for at least 20 minutes at 120°C (248°F). A precipitate will likely occur. Store cool and dark, and use within six months. Discard if there are changes in transparency, colour, or if a new precipitate occurs.

ATTENTION: TOXIC.
f2
Stock IV: Trace metals

for 100 mL:

0.88 g Na2*EDTA (E1644)

0.63 g FeCl3*6H2O (F2877)

0.2 mL of each 1° stock

99 ml dH2O
Into 80 mL of dH2O, dissolve the EDTA entirely, then add the other components. Bring the final volume to 100 mL with dH2O. Autoclave for at least 20 minutes at 120°C (248°F). Store cool and dark, and use within six months. Discard if there are changes in transparency, colour, or if a precipitate occurs.

Primary stocks are prepared in 20 mL and stored at room temperature.

ATTENTION: TOXIC.
f2
Trace metals:

1° stocks
for 20 mL each:

3.58 g MnCl2*4H2O (M3634)

0.44 g ZnSO4*7H2O (Z0251)

0.20 g CoCl2*6H2O (C2644)

0.20 g CuSO4*5H2O (C7631)

0.12g NaMoO4*2H2O (M1003)
Prepare each primary stock separatedly . Add the corresponding quantities of metals to 20 mL of deionized H2O for each stock. Shake until dissolved. Store cool and dark, and use within six months. Discard if there are changes in transparency, colour, or if a precipitate occurs.

ATTENTION: TOXIC.
f2
Vitamins for 100 mL:

0.04 g Thiamine*HCl (T3902)

1 mL Biotin 1° Stock

0.2 mL B12 1° Stock

dH2O
Dissolve the Thiamine in about 80 mL of distilled H2O. Add the vitamin primary stocks. Bring the final volume to 100 mL with dH2O. Distribute in 0.5 mL aliquotes and deep-freeze.

NOTE that the quantity from each 1° stock differ.

ATTENTION: TOXIC.
f2
Biotin
1° stock
for 100 mL:

0.02 g Biotin (B4639)

100 mL dH2O
Dissolve the Biotin in the distilled water. It will require some stirring. You may want to use a magnetic stirrer

ATTENTION: TOXIC.
f2
B12
1° stock
for 20 mL:

0.02 g B12, (V6629)

20 mL dH2O
Dissolve the vitamin B12 in the distilled water.

ATTENTION: TOXIC.
f2
MgCl2 for 1 liter:

71.4 gr MgCl (63064)2
1 L dH2O
Dissolve the Magnesium Chloride in the distilled water. Store in air-tight flask for no longer than two months. Discard if there are changes in smell, transparency, or if a precipitate occurs.

To anaesthetise worms living in full-strength sea water, mix MgCl2 with f2 in a ratio from 1:1 to 5:3 (do some trials to find the best results). Place worm in the anaesthetic for about 10 minutes (also do some trials for the time). The effects go away when substituting the solution for f2.

NOTE that the optimal amount of MgCl2 will strongly depend on the salinity of your cultures. Species from lower salinities will require less MgCl2.
anaesthetic
agar for 100 ml:

100 ml f/2
0.9 gr soft agar (A1296)
Dissolve the agar in the f/2, either using a microwave oven, or over inductive heat (a burner or a plate).

If using an oven:
Use a microwave-safe container and cover. Stirr frequently, and remove any time that it starts bubbling. Check that there are no particles left, heating again and again until the agar is completely dissolved.

If using induction:
Use a heat-proof flask, and gloves or a heat-proof flask-holder. Stirr continuously over the heat to prevent burning of the agar, and remove from heat any time it starts bubbling. Check that there are no particles left, heating again and again until the agar is completely dissolved.





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